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Crazybiocomputing.GitHub.io

Tools about Bioinformatics

Welcome to CrazyBioComputing EcoSystem.

CrazyBioComputing is an ecosystem I developed since few years in order to try various educational innovations in the fields of Image Processing and Bioiformatics.

0. Web Technologies

Some useful links for exploring the world of web technologies: HTML5, CSS3, and JavaScript 5 (JS) and ECMAScript 6 (ES6).

  1. HTML
  2. CSS
  3. JavaScript

1. Image Processing

TODO

2. BioInformatics

My BioInformatics courses are structured in such a way there is a balance between lectures and educational innovations. Most of my classes are based on the use of mini-games.

2.1. Books

  • Bioinformatique - Cours et cas pratique  [Link]
    G. Deléage, M. Gouy.
    2013
    Ed. DUNOD. (in french)
  • BioInformatics for dummies  [Link]
    J-M. Claverie, C. Notredame
    2006
    Wiley Publishing, Inc. (in english)

2.2. Web

  • General
    • Website (in french) containing good articles about Bioinformatics[Link]
    • Wikipedia: Bioinformatics page [Link]
  • Databanks
    • Listing of Bioinformatics databanks available in Nucleic Acid Research
      The 2016 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection"
      Xosé M. Fernández-Suárez, Daniel J. Rigden and Michael Y. Galperin
      [http://nar.oxfordjournals.org/]
  • Pairwise Alignment
    • Wikipedia:Needleman-Wunsch [Link]
    • Wikipedia:Smith-Waterman [Link]
    • B.A.B.A.: Interactive demonstration of N-W [Link] (requires Java-enabled browser)

2.3. Tools

  • Dot-Plot in HTML5, CSS, JavaScript, and WebGL. [TODO]
  • Three-to-One converter. [TODO]
  • Needleman and Wunsch pairwise alignment. [TODO]

3. CrazyBioFlow — Work In Progress

  • Tutorials of CrazyBioFlow
    • Activation of a token
    • Creating a Workflow
    • Use of the '#1' and '#2' tokens

    You can @mention a GitHub username to generate a link to their profile. The resulting <a> element will link to the contributor's GitHub Profile. For example: In 2007, Chris Wanstrath (@defunkt), PJ Hyett (@pjhyett), and Tom Preston-Werner (@mojombo) founded GitHub.

    Further Readings

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